Start with RF excitation and relaxation, then follow gradients as they turn position into frequency and
phase—from body and local coils to an oblique trajectory through k-space and an image reconstructed line by line.
ƒEquation ?meaning · units · live what-if · why care◎Move / zoom / explain 3Ddrag to orbit · use + / reset / − · tap an object to identify it↔Change a controloutputs and cause/effect notes update together
Interactive 3D scanner
GUIDED 3D MODEL · VIEWS 03–05 FOLLOW EVENT ORDERPatient + table
The table carries the patient into the fixed bore. Table motion changes which anatomy is near isocenter; it does not move through k-space and does not electronically select a slice.
SOLID physical hardware GLOW / ARROWS invisible field cue PLANE / CLOCKS / BOXES selected region or calculated data cue
nested as installedpulled apart to teach
At 0%, the coil layers sit where they are installed: concentrically around the bore.
Camera preset · patient positioning
physical X · fixed coil axisphysical Y · fixed coil axisphysical Z · bore axis
↔ Drag to orbit · pinch or wheel to zoom · tap a label or object to explain it
THE CENTRAL RELATION
S(k) = ∫ ρeff(r) e−i2π k·r dr
In plain words: treat the excited body as many tiny, equal-size regions. Each region contributes some receive-coil voltage. Gradients give those contributions a calculable phase—where they sit around one repeating cycle. At address k, the receiver adds every region and stores one pair of signed numbers, I and Q, called S(k). That pair describes the whole excited region; it is not one image pixel. Tap the equation for every symbol, unit, zero case, and a live numerical example.
SEARCHABLE MRI DICTIONARY · 114 / 114 TERMS HAVE THE COMPLETE BEGINNER EXPLANATION
Type the term as you saw it—or describe what confused you.
Every result starts without assumed MRI knowledge, then lets you go deeper into a labeled visual, scanner behavior, clinical consequence, numerical example, and connected terms.
01Age-10 meaning
02Name + symbol decoded
03Physical, calculated, or displayed?
04Exact unit or no unit
05Why MRI needs it
06What fails without it
07What more / less / negative does
BEGINNER-FIRST LEARNING · CHOOSE HOW FAR TO ZOOM
Start with one plain idea. Add detail only when you want it.
The same three-level control appears as a short entry card at every major topic. It changes the explanation layer—not the MRI physics or any simulated parameter.
START SIMPLEEach chapter now begins with one plain-language mental model. Use “Zoom in” on any card when you are ready.
THE WHOLE MRI EXAM · NOT ONLY RF, GRADIENTS, OR K-SPACE
Follow the patient, hardware, signal, and data from room entry to finished images.
An MRI scanner is a coordinated system: safety screening, a continuously energized main magnet, a moving patient table, shim and gradient coils, RF transmit/receive, monitoring, sequence control, digitization, corrections, reconstruction, storage, and display.
Preparation, table, coils, communication, and monitoring
Technologists screen the patient and every entering object, position anatomy and coils, choose a landmark, provide hearing protection and an alarm device, and use MR-conditional monitoring or gating when required.
MAGNET + CRYOGENIC SYSTEM
Main field, cryostat, shielding, cooling, and quench protection
The main magnet supplies B₀ continuously. The cryostat thermally supports the superconducting system; site infrastructure, shielding, and emergency procedures manage fields and rare abnormal events.
FIELD PREPARATION
Localizers, shimming, frequency adjustment, and calibration
Fast survey images establish geometry. Field mapping and shim adjustments improve uniformity; reference scans can estimate coil sensitivity, center frequency, transmit behavior, and reconstruction corrections.
SEQUENCE + POWER HARDWARE
Precisely timed RF, gradients, receive switching, and ADC
The controller schedules RF synthesizers/amplifiers, gradient amplifiers, transmit/receive protection, receiver bandwidth, and ADC sampling. Timing—not a single component—defines the acquisition.
COMPUTE + RECONSTRUCTION
Corrections, channel combination, Fourier encoding, and image formation
Raw multi-channel I/Q data may be corrected for sampling and hardware behavior, calibrated, reconstructed, combined across coils, filtered, scaled, and packaged with geometry and protocol metadata.
DISPLAY + CLINICAL WORKFLOW
Series, image magnitude/phase, measurements, storage, and interpretation
The console and downstream systems show reconstructed images with orientation, scaling, annotations, and metadata. A displayed gray level is the end of a long weighted chain—not a direct photograph or universal tissue unit.
What “rho” actually means—and what more or less of it changes.
Textbooks often reuse ρ for both proton density and the already-weighted signal distribution. This lab keeps those quantities separate, names every factor in the teaching product, and states the reference behind every “relative” number.
“MR-VISIBLE” MEANS
Mobile ¹H signal that can join a detectable echo.
Most clinical proton MRI signal comes from hydrogen nuclei in mobile water and fat. Hydrogen locked in very rigid material can lose transverse coherence before the receiver can sample it; air has very few hydrogen nuclei. “Visible” never means visible light.
“RELATIVE” MEANS
Compared with one declared reference—not an absolute proton count.
Here, an equal-size reference voxel with ρH = 1.00, complete recovery, no T₂* loss, a 90° excitation, and receive sensitivity 1.00 has ρeff = 1.00. Scanner gain and display windowing can rescale all image numbers, so there is no universal brightness or volt value.
“ON THE IMAGE” MEANS
The reconstructed voxel at that physical position.
One k-space measurement is not a pixel. After all complex samples are reconstructed, the ideal local complex value is proportional to ρeff. A magnitude image displays its size, usually after coil combination, scaling, filtering, and window/level.
One equal-size voxel through five named multipliersREFERENCE-NORMALIZED TEACHING MODEL
WHAT THIS SIMPLE PRODUCT INCLUDES
Local mobile-¹H source, one T₁ recovery term, one T₂* survival term, ideal sin α excitation, and one relative receive-sensitivity number.
WHAT REAL MRI MAY ALSO WEIGHT
Flow/inflow, diffusion gradients, magnetization transfer, chemical exchange, contrast agents, fat/water phase, B₀ and B₁ nonuniformity, motion, multi-echo history, receive-channel combination, filters, noise, gain, and display window/level. These are named here rather than hidden inside “other factors,” but they are deliberately held out of this five-factor lab.
CLINICAL READING RULE
Brighter does not automatically mean “more protons.” First ask whether sequence timing, excitation, coil position, pathology, reconstruction, or display scaling also changed.
COORDINATE PRIMER · FIX THE NAMES BEFORE ENCODING
X, Y, and Z name fixed hardware. Read, phase, and slice name jobs.
An axial example often pairs read with Gx, phase with Gy, and slice with Gz—but that pairing is not a law. Rotate the prescribed image plane and the scanner synthesizes each logical job by firing two or three physical gradient coils together.
WHY CARE · Confusing these naming systems can make an oblique image plane, artifact direction, or amplifier limit look wrong.
01 · CHOOSE IMAGE PLANE
02 · CHOOSE LOGICAL JOB
LOGICAL READ REQUEST+40.0 mT/m
one requested vector magnitude · mT/m is field slope
CLICKABLE VECTOR RELATION
[Gx Gy Gz]ᵀ = [+1.000 0.000 0.000]ᵀ × +40.0 mT/m
Each coefficient is a unitless direction cosine. Superscript ᵀ means “write this row as a column vector” (transpose)—it does not mean tesla here. Multiplying by +40.0 mT/m gives a real physical-coil command.
Gxphysical X coil
+1.000 unitless× logical requestGyphysical Y coil
0.000 unitless× logical requestGzphysical Z coil
0.000 unitless× logical request
VECTOR SUMGx alone points along logical read.
The bars are simultaneous amplifier commands, not three sequential encoding events.
00 / WHERE THE MAIN FIELD COMES FROM
Cold wire carries current. The current creates B₀.
A power supply first pushes electric current through many turns of superconducting wire. Those turns act
together like one long solenoid: their magnetic fields add through the bore and return outside the magnet.
After ramp-up, a closed superconducting path can keep that current circulating in persistent mode.
Three-dimensional superconducting MRI magnet and magnetic-field model
SOLID hardware
YELLOW BEADS conventional current direction
MINT / CORAL LOOPS field-line drawing
RAMP SUPPLY CONNECTEDPROBE · +2.95 T · +29,500 G
Yellow beads trace conventional current around the winding. Mint arrows show the resulting +Z field direction. No bead is a proton, electron, or piece of magnetism drawn to scale.
Drag to orbit · pinch, wheel, or use + / ↺ / − to zoom · tap any object · field lines are a map, not physical tubes
Live superconducting-magnet model
IDEALIZED SOLENOID · NOT SERVICE CONTROLS
OPEN ANY WORD
01
Ramp the current
A controlled DC power supply applies voltage so current rises in the cold winding. “Current” means rate of electric charge flow; the wire itself does not race around the bore.
02
Every turn contributes
Each loop makes a magnetic field. Inside a long coil, neighbouring loop fields point mainly the same way and add; more amperes or more turns per metre gives a larger central field.
03
Close the persistent path
Once the target current is reached, an internal superconducting connection completes a very-low-resistance loop. The ramp supply can be disconnected while the established current continues.
04
B₀ stays on
The stable main field exists between scans. RF and gradient pulses switch during imaging; the superconducting main-magnet current normally does not pulse on and off for each patient.
CLICKABLE LONG-SOLENOID ESTIMATE · AT THE CENTER
Bcenter ≈ μ0nI = μ0(N/L)I
4π × 10⁻⁷ T·m/A × 4,000 turns/m × 600 A ≈ 3.02 T
0 A · no current600 A teaching value800 A
At 600 A and the selected winding density, the ideal long-solenoid estimate is 3.02 T. Raising current strengthens B₀ in direct proportion; it does not make current beads travel into the patient.
1,000 turns/mvisible coil is compressed6,000 turns/m
The 4.0 m teaching solenoid represents 16,000 effective turns. Only 52 turns are drawn so the model remains readable; every drawn turn stands for many real turns.
−3 mcenter+3 m
axisnear windingoutside
CURRENT × TURN DENSITY2.40 MA-turn/msource strength for this estimate
IDEAL CENTER B+3.02 T+30,159 G
NUMERIC PROBE B+2.95 T+29,500 G
YOU CHANGED CURRENT / WINDING DESIGN
More ampere-turns make a stronger main field.
At the center, increasing I or n increases the field almost linearly in this long-solenoid estimate. Clinically, a different B₀ changes the ¹H carrier frequency and many scanner/tissue behaviors; it is a magnet design and site platform, not a routine sequence knob.
WHAT PHYSICALLY MOVES?
Electric charge has a tiny net drift around a closed conductor. Energy and electromagnetic influence establish through the circuit; the copper-colored wire and patient do not circulate.
WHAT ARE FIELD LINES?
Drawing lines connect the field direction at many points. They close into loops and crowd where the drawing represents stronger field. They are not strings, rays, current paths, or proton tracks.
WHY TESLA AND GAUSS?
Both measure magnetic flux density: 1 tesla = 10,000 gauss. Therefore 3 T = 30,000 G. Clinical MRI names B₀ in tesla; gauss is common in fringe-field discussions.
WHY SUPERCONDUCT?
Ordinary resistance would turn sustained high current into continuous heat. Below its critical conditions, the magnet conductor can support persistent current with extremely small decay; cooling and protection remain essential.
01 / FROM FIELD TO POSITION
A controlled tilt in the magnetic field.
A gradient coil adds a small, nearly linear variation to the much larger main field. Proton frequency now
carries an address: where a spin sits determines how fast its phase turns.
B₀ − ΔBfield strength →B₀ + ΔB
x = +8.0 cm
Live field model
¹H at B₀ = 3.0 T
LOCAL FIELD
Bz(r,t) = B0 + G(t) · r
0.5 Tclinical 1.5 / 3 T7.0 T
−400+40 mT/m
−12 cmisocenter+12 cm
ΔB+2.00 mT
Δf = γ̄ΔB+85.15 kHz
local f127.825 MHz
CARRIER LAW
f0 = γ̄B0
42.58 MHz/T × 3.0 T = 127.73 MHz
B₀ CHANGESRF carrier127.73 MHz
B₀ DOES NOT SETGradient offset+85.15 kHz
B₀ DOES NOT SETOn-resonance flip92.0°
B₀ DOES NOT SETk-space speed1.064 × 10⁶ m⁻¹/s
At fixed G, position, B₁⁺, and pulse duration, changing B₀ retunes the MHz carrier. The gradient offset, ideal flip angle, and dk/dt stay unchanged.
Scope: this control retunes the field/RF frequency model. The TE/TR tissue constants remain the explicitly stated illustrative 3 T model; real coil fields, SAR, and relaxation are field-dependent.
i The gradients are tiny beside B₀, but they are switched quickly and precisely. The audible knocking in MRI is gradient hardware moving under Lorentz force.
BEGINNER GAME / THREE HIDDEN WATER BUCKETS
You are the operator. Find water with fields.
Three water buckets are hidden inside the bore. From the next room, choose a gradient vector, tune a narrow
RF frequency offset, send a short probe, and listen for the echo. Find each bucket’s X, Y, and Z coordinate—then
see why a frequency under one gradient selects a plane rather than a unique point.
WATER FINDER / CONTROL ROOM¹H · THREE HIDDEN OBJECTS · TEACHING GAME
Three-dimensional hidden water bucket game
SCANNER ROOMTHE OPERATOR IS OUTSIDE THIS ROOM
READY · BUCKETS HIDDENGx +12.0 mT/m · plane x = 0.0 cm
The translucent square is every position that has the tuned frequency under the current gradient. It is a plane, not a flashlight beam.
Drag to orbit · solid ring = bore · blue plane = same-frequency locations · buckets reveal only after detection
OPERATOR NOTEBOOK · MEASURED COORDINATES
Match peak height across X, Y, and Z.
water volume / signal tagX coordinateY coordinateZ coordinatestatus
0.6 L · small peak???0 / 3 axes
1.0 L · medium peak???0 / 3 axes
1.4 L · large peak???0 / 3 axes
0 OF 9 COORDINATES FOUNDOne frequency measurement gives one projection—not a full 3D address.
With Gx on, frequency tells X but says nothing about Y or Z. Rotate the gradient job and repeat. Real MRI performs a much richer, systematic version with many phase and frequency encodings.
1
No gradient: no position clue
With G = 0, all three identical-water resonances sit near the same f₀. Frequency can say “water signal exists,” but not where it came from.
2
One gradient: one projection
Δf = γ̄G·r. A measured frequency gives position along G, while an entire perpendicular plane has that same frequency.
3
More encodings: reconstruct location
Real imaging collects many known phase/frequency patterns. Reconstruction solves the mixed whole-object voltages for a spatial image; an operator does not hunt voxel by voxel.
02 / RF TRANSMIT, RELAXATION & RECEIVE
Excite broadly. Listen locally.
The transmit coil creates the rotating B₁⁺ field that tips magnetization. After excitation, the scanner stops
transmitting and receive coils detect the tiny voltage induced by precessing transverse magnetization. A
common 1.5 T / 3 T workflow is body-coil transmit with a close local array receiving.
RF COIL CHAIN / ¹H AT 3.0 TTX / RX SWITCHING · IDEALIZED FIELD MODEL
RF WAVEFORM DECODER · THREE DIFFERENT SHAPES, THREE DIFFERENT JOBS
Frequency is horizontal spacing. B₁⁺ amplitude is height. Pulse duration is width.
The plots share the live controls below. They are separated because “a faster wave,” “a stronger pulse,” and “a larger received signal” do not mean the same thing.
Change B₀ → retune the carrier in this comparison
T means tesla, the unit of magnetic-field strength.
One RF cycle
The plotted field goes from a positive peak, through zero and a negative peak, back to the next positive peak: one complete 360° oscillation. It is a cycle of the RF magnetic field—not a proton traveling in a circle.
Envelope
The slow outline connecting the peaks of thousands of fast carrier cycles. It is not a second radio wave and not a container; it summarizes how strongly the transmitter is driven over time.
Received magnitude
The size of the complex voltage after the receiver mathematically removes the MHz carrier. Phase is stored too, even though this row shows only non-negative magnitude.
RECEIVER SIGNAL PATH · BEFORE AND AFTER DEMODULATION
How one fast RF coil voltage becomes I and Q.
Before demodulation there is one rapidly alternating voltage. The receiver compares it with two synchronized reference waves; low-pass filtering leaves two slower signed voltages that preserve the signal’s magnitude and phase.
Same signal · four viewsNORMALIZED PHASE +45°
Three-dimensional RF transmit and receive model
TRANSMIT WINDOW · B₁⁺127.73 MHz
BODY COIL → B₁⁺ → SPINSα = 92.0°
Local receive elements are detuned while the body coil transmits.
Drag to orbit · mint cage is body RF · coral loops are local elements
dead time / switch
TRANSMIT FLIP ANGLE
α = γ ∫ B₁⁺(t) dt
RECEIVED VOLTAGE
vRx(t) ∝ −dΦM/dt
2 µTRF field strength18 µT
0.20 mspulse area3.00 ms
close · 1 cmreceive geometryfar · 12 cm
RF waveformpower amplifier
→
body coilB₁⁺ transmit
→
magnetizationprecessing spins
→
local arrayB₁⁻ receive
→
preampsADC / k-space
BODY TRANSMIT · LOCAL RECEIVE
The large built-in body coil drives a broad, comparatively uniform B₁⁺ field. During transmit the nearby receive array is actively detuned; during reception the transmitter is isolated and the local elements feed low-noise preamplifiers.
predicted rectangular-pulse flip92.0°
receive sensitivity proxy1.00× local
excitation coveragebroad / uniform
receive coveragelocal · 8 channels
transmit safety focuswhole-body SAR
switch stateRx array detuned
The sensitivity number is a normalized geometry teaching proxy, not a scanner specification. The shared B₀ control retunes the displayed ¹H carrier; it does not rescale this idealized coil geometry, B₁ field, SNR, relaxation, or SAR model. Actual values require coil- and patient-specific electromagnetic measurements.
LIVE 3D LOCAL-COIL RECEIVE JOURNEY · USES THE MODEL ABOVE
What a local coil physically captures—and what happens after.
Drag the stage scrubber with a finger or press Play. The 3D camera follows the signal from the patient to the final combined image.
STAGE 00 OF 07 · HARDWARE HANDOFFStop transmitting before the tiny receiver listens.
The body coil finishes the high-power B₁⁺ pulse. The transmitter is isolated, the receive-only local loops come out of their protected detuned state, and their low-noise paths are connected.
WHAT CAUSES THIS?
The programmed pulse ends and the transmit/receive switching network changes electrical connections after a short recovery interval.
WHAT EXISTS NOW?
Excited transverse magnetization exists in the patient. The local array is now electrically able to respond to it.
MEASURED IN WHAT?
Switch timing is measured in seconds, commonly microseconds (µs). No image value has been measured yet.
WHY DO WE CARE?
The receive signal is tiny compared with transmit power. Isolation protects the preamplifier and prevents transmitter leakage from hiding early signal.
DO NOT CONFUSE IT WITH
The RF pulse did not travel into the local coil as an image. It prepared magnetization; reception is a later electromagnetic induction event.
transmit endsdrag / swipe through processingcombined image
0.25×display speed only2.00×
PREAMPLIFIER VOLTAGE GAIN · TAP FOR UNITS AND CLIPPING
GdB = 20 log10(Vout/Vin) ↔ Vout = Vin·10GdB/20
Gain scales signal and existing input noise; it does not create localization or improve input SNR.
20 dB · ×10voltage scaling60 dB · ×1000
32 kHzsample rate / noise tradeoff256 kHz
CURRENT SETTINGSAt 40 dB, voltage is multiplied by 100 before digitization. A 128 kHz sample rate gives 7.81 µs between samples in this one-sample-per-dwell model.
IN PATIENTMxy(r,t)
Moving transverse magnetization distributed over position r.
→AT COIL cvc(t) ∝ −dΦc/dt
One continuous signed RF voltage per element.
→AFTER DEMODULATIONSc(t) = Ic(t) + iQc(t)
Two slower signed components per element.
→AFTER ADCSc[n] at k[n]
Digital complex samples assigned to gradient-created addresses.
→SIMPLE COMBINATION EXAMPLEIRSS(r) = √Σc|Ic(r)|²
Aligned coil images become one relative magnitude image; tap for limits.
B₁⁺
Transmit field
RF power at the Larmor frequency rotates magnetization. Amplitude and pulse duration set flip angle; spatial B₁⁺ variation makes flip angle nonuniform.
B₁⁻
Receive sensitivity
Precessing transverse magnetization induces a tiny voltage. Close local elements couple strongly to nearby anatomy and admit less distant noise.
T/R
Isolation matters
Receive-only elements are detuned during the high-power transmit pulse. The transmit path is then isolated while low-noise preamplifiers listen for the echo.
TE / TR RELAXATION CLOCKILLUSTRATIVE 3 T TISSUE MODEL · 128 PHASE ENCODES
Predicted relative signalSPIN ECHO · TR 500 / TE 15 ms
AR
fatgraywhiteCSF
Recovery before RF / decay before echoT₁ RECOVERY + T₂ DECAY
IDEAL SPIN-ECHO SIGNAL
S = ρH(1 − e−TR/T₁)e−TE/T₂
The 180° pulse refocuses static dephasing, so ideal echo amplitude follows T₂ rather than T₂*.
Short TR samples tissues before full longitudinal recovery, strengthening T₁ differences. Short TE limits T₂ decay, so the current spin echo is predominantly T₁ weighted.
white matter signal0.280
CSF / fluid signal0.114
pairwise contrast42.2%
dominant weightingT₁ weighted
2D scan-time proxy1:04 · 128 lines
echo fraction TE / TR3.0%
Signals use simplified steady-state equations and illustrative relaxation values near 3 T. Real contrast also depends on sequence details, RF profiles, echo trains, magnetization transfer, flow, diffusion, coils, reconstruction, pathology, and field strength.
03 / THREE ORTHOGONAL CONTROLS
Same physics. Three jobs.
Read, phase, and slice are logical jobs attached to the prescribed image plane. The X/Y/Z labels in this first axial example name image coordinates—not a permanent promise that read = physical Gx, phase = physical Gy, and slice = physical Gz. For an oblique plane, the scanner combines all three fixed physical coil sets.
THE THREE TABS BELOW COMPARE ROLES; THEIR LEFT-TO-RIGHT ORDER IS NOT TIME. In the simplified 2D sequence taught here, RF plus the slice-select gradient first creates transverse signal in a slab. A later phase-encoding lobe creates a retained angle pattern. A read prephaser then prepares the start, and only afterward do the read gradient and ADC collect samples.
low fhigh f
GX · ON DURING ADC
Position becomes frequency.
During signal readout, Gx makes spins at different x positions precess at different frequencies. Sampling through time walks continuously across one row of k-space.
FREQUENCY OFFSETΔf(x) = γ̄ Gx x
gradient actionContinuous plateau
moves throughkx within a line
resolution set by±kx,max
READOUT VS PHASE · EVENT-BY-EVENT
After RF creates transverse signal, set one ky address. Then sample across kx.
They are not two different kinds of magnetism. Both logical jobs use a gradient, and either gradient creates position-dependent frequency offsets while it is on. Their timing relative to the receiver is what makes their stored information different.
IMAGE PLANE · WHICH PHYSICAL COILS DO THE JOB?
In this axial example, logical read uses physical Gx and logical phase uses physical Gy.
−3 Δksigned gradient area · not y position+3 Δk
0.5×changes animation only2×
LOGICAL JOB 01 · ALONG THE IMAGE’S READ AXIS
READOUT
Called “readout” because the receiver’s ADC reads many samples while the positive read gradient is on.
WHAT THE GRADIENT DOES RIGHT NOWNo x-dependent offset from Gread.
The MHz RF carrier sets the rotating reference. Readout uses much smaller position-dependent receive-frequency offsets around that carrier—not a change in RF amplitude.
LOGICAL JOB 02 · ALONG THE IMAGE’S PHASE AXIS
PHASE ENCODE
Called “phase” because the lobe ends before ADC, yet its position-dependent phase pattern remains during readout.
WHAT THE GRADIENT DOES RIGHT NOWNo y-dependent offset from Gphase.
While the phase lobe is on it also creates frequency differences. After it turns off, those added frequency offsets vanish, but the accumulated angular differences remain.
THE TWO JOBS COMBINE
Known phase-gradient area sets ky; read gradient plus ADC samples successive kx addresses.
The squares are calculated k-space addresses, not anatomy pixels. Here a “row” means seven data addresses with one shared ky label and changing kx labels. The sequence controller commands the gradient area; phase is the resulting angle pattern, not an agent that chooses.
current addresskx 0 · ky 0
stored this TR0 / 7 samples
+ky−kx+kx
current addressstored samplesame ky from one phase-gradient area
WHY THE WORD “LOGICAL”?
The job stays named read or phase even when its physical coil recipe changes.
Logical axes belong to the prescribed image plane. Physical Gx, Gy, and Gz are fixed hardware channels. The scanner rotates the two logical commands into coil currents; the anatomy and image jobs do not have to line up with the bore.
LOGICAL READ → PHYSICAL COILS
Gx
Gy
Gz
LOGICAL PHASE → PHYSICAL COILS
Gx
Gy
Gz
EVENT 01 / 08 · BEFORE IN-PLANE ENCODING
RF CREATES TRANSVERSE SIGNAL
The RF pulse tips magnetization so a receive signal can exist. RF transmit is not readout: the receiver is protected and ADC is closed during excitation. Neither in-plane logical gradient job has encoded a k-space row yet.
READOUT MOTION THROUGH K-SPACEdkread/dt = γ̄ Gread(t)
A stronger read gradient crosses k-space faster. With dwell time fixed, that changes sample spacing and therefore FOV; with the acquisition prescription adjusted, it also affects bandwidth and distortion.
WHY CARE · This job sets read-direction sampling, bandwidth, chemical-shift displacement, and distortion behavior.
After RF has created transverse magnetization, the signed area under the phase gradient creates a known phase-versus-position ramp and therefore sets ky. Changing that commanded area on successive TRs sets different ky addresses; it does not move to a literal y location in the patient.
WHY CARE · Phase steps strongly affect scan time, phase FOV, wrap, motion ghosts, and the direction of many artifacts.
SAME PHYSICS
Both cause Δf while on
A magnetic-field gradient changes local precession frequency. “Frequency encoding” and “phase encoding” describe how the sequence uses the accumulated effect, not two different gradient mechanisms.
DIFFERENT TIMING
ADC open versus ADC closed
Readout samples continuously while Gread is on. Phase encoding applies a lobe before sampling, closes it, and carries the retained phase ramp into the readout window.
PRACTICAL CONSEQUENCE
One row per repetition
Readout collects many kx points in one ADC window. Conventional 2D Cartesian imaging repeats the TR with a new phase area to cover many ky rows, so the phase loop often dominates scan time.
MODEL BOUNDARY · Events are separated here so each cause is visible. Real pulse sequences often overlap the read prephaser and phase-encode lobe, use tens to thousands of samples, include finite ramps and spoilers, and may collect multiple ky lines per TR with echo trains or segmented readouts.
Columns of R are the physical directions of logical readout, phase, and slice. Because R is orthonormal, the three logical axes remain mutually perpendicular.
−90°physical X rotation+90°
−90°physical Y rotation+90°
−90°about slice normal+90°
−70reverse at 0+70 mT/m
Rotation matrix R · physical rows by logical columns
physical
Read
Phase
Slice
Gx
+1.000
0.000
0.000
Gy
0.000
+1.000
0.000
Gz
0.000
0.000
+1.000
PHYSICAL AMPLIFIER COMMANDS±40 mT/m per-axis model
GX
GY
GZ
AXES ALIGNED
In an axial prescription, logical readout aligns with the physical X gradient. Only the Gx amplifier is needed for this +30.0 mT/m readout plateau.
logical vector magnitude30.0 mT/m
safe logical maximum40.0 mT/m
limiting physical channelGX · 75%
Ideal per-axis amplitude example. Real systems also constrain slew rate, duty cycle, peripheral nerve stimulation, and vector-dependent safety limits.
04 / GRADIENT MOMENT & SPIN PHASE
The area under G becomes phase.
Gradient amplitude alone does not set a k-space coordinate. Its signed time integral does. Build one lobe,
add an opposite rewinder, and watch a three-dimensional spin ensemble wind into a phase pattern—or return
coherently to k = 0.
ROTATING FRAME / IDEAL LINEAR GRADIENT20 mm UNIFORM SPIN COLUMN
GX MOMENTkx = +170.3 m⁻¹
Phase is drawn in the transverse x–y plane; B₀ points along physical z.
Drag to orbit · scroll to zoom
ZEROTH GRADIENT MOMENT
M0(t) = ∫0t G(t′) dt′
POSITION IN K-SPACE
k(t) = γ̄ M0(t)
SPIN PHASE
φ(r,t) = 2π k(t) · r
Signed gradient area and accumulated kUNBALANCED
−300+30 mT/m
00.601.20 ms
none100% · k = 0120%
COHERENT SIGNAL FROM THE COLUMN8.9%
The positive Gx area moves the sample to +kx. Spins separated along x retain different phases after the lobe turns off, so their vector sum is small.
net M₀+4.00 mT·ms/m
k coordinate+170.3 m⁻¹
phase across 20 mm+3.41 turns
01
Area, not height
A weak gradient held longer can create the same phase slope and k-space displacement as a short, strong gradient.
02
Polarity sets direction
Changing the sign of G reverses the phase ramp and moves to the opposite side of k-space along the selected logical axis.
03
Balanced area refocuses
For stationary spins in this ideal model, an equal opposite lobe cancels M₀. The phase ramp unwinds and the coherent signal returns at k = 0.
05 / LIVE CARTESIAN ACQUISITION
Build an image from zero samples.
This is an interactive acquisition—not a prerecorded video and not an image being uncovered. Start with an intentionally empty reconstruction; each TR adds complex Fourier data from the whole slice, and the image is recalculated.
Δk · EXPLAIN EVERY WORD BEFORE USING THE FORMULA
Two numbered phase-pattern labels—and the exact numerical step between them.
A k-space “address” is not a place in the patient and has no width. It is a number attached to one measured complex sample. That number states how many gradient-created phase cycles occur per metre across the object for that sample.
“ADDRESS”A coordinate number such as kx = 9.10 m⁻¹.
It labels the phase pattern used when one whole-object I/Q sample was measured. It does not select a body point.
“NEIGHBOURING”Consecutive entries on the planned sampling list.
For example, 9.10 and 13.65 m⁻¹ are neighbors when no planned address lies between them.
“GAP”Subtraction on a number line—not empty physical space.
13.65 − 9.10 = 4.55 m⁻¹. An address itself has no size; Δk is only the numerical separation.
“CYCLES PER METRE”Cycles of relative spin phase across distance.
One cycle is a full 360° change in the gradient-created phase pattern, not one RF carrier oscillation and not a proton orbit.
Number line + phase patterns + repeating image periodΔk 4.55 m⁻¹ · FOV 220 mm
Every spin’s complex contributionUNIFORM PHASE AT k = 0
+y+x
−π0+π
Color is the phase of ρeff(x,y)e−i2πk·r. Here ρeff means the local echo signal after the sequence and receive-coil factors explained in the rho lab. The receiver adds every colored contribution into one complex number.
The sample’s k-space addresskx 0 · ky 0
kx
ky
LOG |S(k)|LOWHIGH
The background is the phantom’s exact Fourier spectrum. The coral ring marks the single receiver sample inspected at left.
ONE RECEIVER SAMPLE
S(kx,ky) = ∫∫ ρeff(x,y)e−i2π(kxx+kyy) dxdy
one k-space coordinate is a weighted sum from the entire excited slice
−32 Δkcenter+31 Δk
−32 Δkcenter+31 Δk
COHERENT DC SAMPLE
At k = 0 the encoding phase is identical everywhere. All positive spin density adds coherently, producing the large center coefficient that represents the object’s average signal—not a center pixel.
RF, gradients, receiver, and signalTE 6 ms · TR 30 ms
The event block is expanded so short RF and gradient operations remain visible; the broken segment compresses idle recovery before the next RF pulse.
Integrated gradient pathkx 0.0 · ky 0.0 m⁻¹
Violet is unsampled prephasing. Mint is the portion stored by the ADC. The yellow ring is kx = 0—the echo center on this ky row.
RF + GZ · SLICE EXCITATION
BODY TX ON · RX ARRAY DETUNED
+GZ · RF BAND SELECTS Z
The body transmit coil and slice-select gradient act together first: RF creates transverse magnetization only in the frequency-matched slab. No in-plane sample has been recorded yet.
TIME IN TR0.00 / 30 ms
K-SPACE COORDINATEkx 0.0 · ky 0.0 m⁻¹
ADC STATEOFF · 0 / 64 SAMPLES
RECEIVE MAGNITUDE0.0% · BEFORE ECHO
THE ACQUISITION CHAIN
k(t) = γ̄∫G(τ)dτ → S(k) → ℱ−1
gradients choose the Fourier address; the ADC stores the complex receiver voltage only while its gate is open
160sets Δk + pixel320 mm
64receiver bandwidth256 kHz
−32Gy moment+31
5RF center → echo25 ms
15next RF + scan time100 ms
20illustrative tissue160 ms
REFERENCE PRESCRIPTION
A 220 mm FOV sampled at 64 readout points produces 3.44 mm pixels and Δk = 4.55 m⁻¹. Scrub the timeline or change a parameter to see the dependent quantities move together.
Δk = 1 / FOV4.55 m⁻¹
nominal kx,max145.5 m⁻¹
ideal Δx = FOV / 643.44 mm
ADC dwell / window7.81 µs / 0.50 ms
readout Gx13.7 mT/m
Gy moment−1.708 mT·ms/m
signal magnitude left at echo by T₂*89.7%
64-line scan proxy1.92 s
Ideal one-line-per-TR Cartesian GRE model with 64 complex samples and no ramp sampling. “Total sample rate” is used here because vendor bandwidth displays may instead report Hz/pixel. Here T₂* controls only the slow decay of transverse signal magnitude with time; use the TE/TR lab above for the full spoiled-GRE steady state.
Open the definitions below, then press Run. This explanation will follow RF transmit, gradients, receive sampling, and reconstruction through each repetition.
GY PHASE ENCODE · ky −32
The commanded Gy time-area creates a retained phase ramp and sets this TR’s ky label.
RF has already created transverse magnetization. While the brief Gy lobe is on, y position changes precession frequency; integrating that difference through time creates a y-dependent transverse-phase ramp. After Gy turns off, that retained ramp corresponds to one spatial-frequency coordinate ky—not a row of anatomy and not a decision made by phase.
RF carrier frequency≈ 127.73 MHz at 3.0 T+
How fast the transmit field oscillates and the received voltage alternates. It is tuned near the ¹H Larmor resonance. It may be offset or shaped to select a slice, but it is not the waveform height.
RF amplitude · B₁⁺µT · slow strength outline+
How strong the transmit field is. Together with pulse duration it sets flip angle. The drawn outline is simply B₁⁺ strength versus time; it cannot display the tens to hundreds of millions of carrier cycles per second at this scale.
Gradient · Gx, Gy, GzmT/m · field slope+
Not a radio wave. A gradient slightly changes local Larmor frequency with position. Its signed area sets retained phase and the k address; while it remains on, its amplitude sets how many inverse metres that numerical address changes per second.
Received signalcomplex voltage · I + iQ+
The coil detects a tiny RF voltage near the carrier. The receiver removes that fast carrier and stores a complex sample: magnitude says how much coherent signal arrived and phase preserves spatial encoding.
Image brightness|inverse Fourier transform|+
Not raw RF amplitude and not a k-space location. Reconstruction combines every acquired complex sample, and magnitude display maps the resulting voxel signal to brightness.
START · 0 OF 4096 COMPLEX SAMPLES
No acquired data means no MRI image.
The reconstruction canvas is intentionally empty. Press Run or drag the bottom progress slider; it controls the simulated acquisition and recalculates the image from only the samples acquired so far.
NOW ACQUIRING · LARGER |k| · 4095 OF 4096 SAMPLES
The scanner is preparing the next row; the image has not changed yet.
Near the k-space origin, encoding phase varies slowly across the slice, so large-scale structure contributes strongly. This does not draw the center of the head; the coefficient still changes every reconstructed pixel. Reconstruction changes only after the receive ADC stores more complex samples—not merely because the animation cursor moves.
00No datano image yet
01Near k = 0broad shape + contrast
02Larger |k|edges + fine detail
03All rowscomplete ideal model
THE RULEA k-space sample does not paint one image pixel. Every acquired complex coefficient changes the calculation of every reconstructed pixel.
Pulse sequence / one TRTR 01 / 64
ExciteSelect zSet kyTraverse kx
Raw signal / k-spacekx −32 · ky +31
kx
ky
Each acquired cell stores S = I + iQ. Its displayed brightness is
L = ln(1 + √(I² + Q²)); this compresses the preview only. Position in k-space is spatial frequency—not a location in the head.
Fourier reconstruction0% DATA
0 / 4096 COMPLEX SAMPLESNO MRI IMAGE YET
Run the acquisition or drag the progress slider.
AR
Δx = 3.4 mm
0 samples: the canvas is deliberately empty because no image can be reconstructed yet.
Near k = 0
Contrast & broad shape
Slow spatial variation. High signal energy. Acquired at the echo center.
Large |k|
Edges & fine detail
Rapid spatial variation. Extending farther raises the ideal resolution limit.
Here
is a spatial-phase address, not a physical position or a moving particle. A gradient changes that address over
time: hold one component constant and the address follows a straight line; reverse it and the address turns
back; vary two components together and the address can spiral. Compare five encoding strategies built from that rule.
WHAT DOES k MEAN?
Count full turns of relative spin phase across distance.
k = 100 m⁻¹ means the gradient-created phase pattern completes 100 turns per metre. Therefore two fixed positions 10 mm apart differ by one full 360° turn at that instant.
The marker is the current data address where ADC stores a whole-object complex sample. It is not a proton, voxel, anatomical location, RF carrier cycle, or signal amplitude.
FIXED POSITION rk = +100 m⁻¹
0 mm 0°2.5 mm 90°5.0 mm 180°7.5 mm 270°10 mm 360° = 0°
10 mm of position → 1 complete phase cycle
WHY A GRADIENT “MOVES” kdk/dt = γ̄G(t)
dk/dt is the rate at which the spatial-phase address changes, in m⁻¹/s. G(t) is the field slope in T/m. Positive G moves toward +k, negative G toward −k, and G = 0 holds the address still.
WHY CARE · The visited extent sets potential detail, spacing sets FOV, and a wrong address from delay or miscalibration creates blur, ghosts, or geometric distortion.
TRAJECTORY / IDEAL COMMANDREADY
Interactive k-space trajectory
commanded k(t) delayed response
CURRENT SAMPLEk = (−1.00, −1.00, 0.00)
Drag to orbit · scroll to zoom
MULTI-SHOT · RECTILINEAR
One echo, one row.
A prephaser sets the negative-kx starting address. The readout gradient traverses one constant-ky line while ADC samples. On the following repetition, a different signed phase-gradient area creates a different retained phase ramp and sets the next ky value.
THE TRAJECTORY LAWG is a field slope. Its direction chooses which k coordinate changes; its magnitude sets the address-change rate in m⁻¹/s.
dkdt= γ̄ G(t)
Representative gradient commandSHOT 01 / 15
ideal10 µs20 µs
i Delayed or filtered gradient response means the scanner may sample somewhere other than the commanded coordinate. Non-Cartesian reconstruction therefore often uses a measured trajectory.
coverage / excitation1 k-space row
center crossingsonce per echo
reconstructiondirect FFT
G(t)
Gradient amplitude
Controls how rapidly the numerical k address changes. A stronger readout gradient covers more spatial-frequency address per unit time; nothing physically flies through the patient.
dG/dt
Slew rate
Limits how sharply a path can turn. Fast switching also drives acoustic noise and peripheral nerve-stimulation constraints.
ADC(t)
Sampling window
The path may move while the receiver is off. Only coordinates visited during ADC become acquired data samples.
07 / RESOLUTION LAB
Shape the voxel in all three axes.
Resolution is not a “megapixel” setting. It follows from field of view, sample count, and how far the
acquisition reaches in k-space. Smaller voxels usually cost signal-to-noise, scan time, or both.
3D ENCODED VOLUME1.72 × 1.72 × 5.00 mm
XYZ
Drag to orbit · highlighted cell is one voxel
Protocol builder
XReadoutfrequency
1.72 mm
YPhaseencoded
1.72 mm
ZSliceRF selected
5.00 mm
voxel volume14.77 mm³relative SNR proxy 1.00×
k-space extent±291 / ±291 m⁻¹Z uses slice profile
minimum phase encodes128≈ 25.6 s at TR 200 ms
REFERENCE PRESCRIPTIONWhat changed—and what it costs
This 220 mm, 128 × 128 reference produces 1.72 mm in-plane sampling. Move any control to see its direct consequence for detail, signal, and encoding time.
in-plane pixel area 1.00×signal proxy 1.00×phase-time proxy 1.00×
PIXEL / VOXEL SIZE
Δx = FOVx / Nx ≈ 1 / (2kx,max)
FIELD OF VIEW
FOVx = 1 / Δkx
2D SLICE THICKNESS
Δz = BWRF / (γ̄ |Gz|)
SLICE MICROSCOPE / RF + GZIDEAL LINEAR FIELD · ¹H
Gz polarity
Three-dimensional RF-selected slice
LOWER FREQUENCYHIGHER FREQUENCY
RF-SELECTED SLAB4.70 mm
center z = 0.0 mm · axial plane
Drag to orbit · highlighted rings fall inside the transmit passband
FREQUENCY ADDRESS
Δf(z) = γ̄ Gz z
SELECTED THICKNESS
Δz = BWRF / (γ̄ |Gz|)
Frequency-to-position map+GZ · CENTERED RF
41730 mT/m
0.53.256.0 kHz
−20on-resonance+20 kHz
CENTERED AXIAL SLICE
Gz maps position to frequency. The 2.0 kHz RF passband intersects that line around z = 0, exciting an ideal 4.70 mm slab.
frequency slope0.426 kHz/mm
RF passband−1.0 … +1.0 kHz
slice center0.0 mm
ideal thickness4.70 mm
BWRF ↑
Thicker slab
A wider transmit band matches a larger interval of positions on the same frequency slope.
|Gz| ↑
Thinner slab
A steeper frequency slope maps the same RF bandwidth onto a narrower spatial interval.
fRF ↕
Move the slice
Changing the RF center frequency moves the intersection without changing the ideal thickness.
08 / SAMPLING & POINT RESPONSE
Change k-space. The image answers.
Spatial resolution, field of view, ringing, and wraparound are different consequences of how k-space is
sampled. Apply the operations directly to the complex data and inspect both the reconstructed image and the
point-spread function that produced it.
FOURIER LAB / COMPLEX DATA64 × 64 PHANTOM
Apply along
Sampling prescription
CUTOFF / RESOLUTION
Δx ≈ 1 / (2kx,max)
SPACING / FIELD OF VIEW
FOVx = 1 / Δkx
25% · blurred60%100% · full
FULL REFERENCE
All encoded frequencies are retained at the native Δk. The PSF approaches one image pixel and no coherent wrap replicas are introduced.
nominal Δx × Δy3.44 × 3.44 mm
effective FOV220 × 220 mm
PSF FWHM1.0 × 1.0 px
retained samples4,096 / 4,096
Applied sampling mask100% RETAINED
kykx
Mint points contribute to reconstruction. Coral lines are inside the selected extent but skipped by uniform undersampling.
Image-space PSFℱ⁻¹{MASK}
positivenegative
The central lobe sets effective resolution; sidelobes produce ringing or displaced wrap replicas.
Resulting reconstructionREFERENCE
AR
Full k-space extent and native spacing preserve the simulated image’s available detail and field of view.
01
Truncate extent
Removing outer k-space lowers the spatial-frequency cutoff. Image space is convolved with a broader sinc-like response: detail softens and sharp boundaries ring.
02
Increase spacing
Keeping every Rth point multiplies the effective Δk by R and reduces the encoded FOV by R. Repeated PSF peaks fold distant anatomy into the displayed FOV.
03
Apodize
A Hann or Hamming taper suppresses PSF sidelobes and Gibbs ringing, but broadens the central lobe. A calmer boundary is purchased with effective resolution.
09 / THE COMPLETE CHAIN
From current waveform to one image voxel.
01
Gradient current
Amplifiers drive X, Y, Z coil windings. Current and geometry create a controlled field slope in T/m.
I(t) → G(t)
02
Spin phase
The local field changes Larmor frequency. Accumulated phase records the gradient’s area through time.
φ(r,t) = γ r·∫G dt
03
k-space sample
The receiver sums every transverse spin at the current spatial-frequency coordinate.
k(t) = γ̄∫G dt
04
Image estimate
An inverse Fourier transform separates the superposed spatial frequencies into locations.